Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yeeCPutative protein. (405 aa)    
Predicted Functional Partners:
yeeB
Putative ATP-dependent helicase YeeB.
 
  
 0.981
hsdM
Type I restriction enzyme EcoEI M protein.
  
  
 0.928
yeeA
Putative DNA methyltransferase YeeA.
 
  
 0.924
MJECL41
Putative type-1 restriction enzyme MjaXP specificity protein.
  
  
 0.897
AQ1_02465
Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid.
       0.775
ccdB
Toxin CcdB.
       0.773
hsdR
Type I restriction enzyme EcoAI R protein.
  
  
 0.660
AQ1_02611
50S ribosomal protein L22/unknown domain fusion protein.
     
 0.503
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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