Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
agcS-2Sodium/alanine symporter AgcS. (493 aa)    
Predicted Functional Partners:
AQ1_02485
Putative oxidoreductase.
       0.746
AQ1_01634
Putative chloride channel protein ClcB-like.
  
    0.664
yhdH-2
Putative sodium-dependent transporter YhdH; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
     
 0.600
flgF
Flagellar basal-body rod protein FlgF.
    
   0.524
flgF-2
Flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
    
   0.524
yxiE
Universal stress protein YxiE.
 
    0.502
pssA
CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
  0.409
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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