Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_02500Phage prohead protease, HK97 family. (178 aa)    
Predicted Functional Partners:
AQ1_02501
Phage major capsid protein, HK97 family.
 
  
 0.954
AQ1_02499
Portal protein.
 
   
 0.949
AQ1_02503
Putative terminase large subunit.
 
     0.832
AQ1_02320
Phage major capsid protein, HK97 family.
 
  
 0.665
AQ1_02396
Putative protein.
 
   
 0.531
AQ1_02319
Phage gp6-like head-tail connector protein.
 
   
 0.525
AQ1_02498
Hypothetical protein.
     
 0.524
AQ1_02502
Hypothetical protein.
       0.469
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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