Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fdxAFerredoxin-1; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (112 aa)    
Predicted Functional Partners:
korA
2-oxoglutarate oxidoreductase subunit KorA.
  
 0.993
iorA
Indolepyruvate oxidoreductase subunit IorA.
  
 0.944
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 
 0.907
korB
2-oxoglutarate oxidoreductase subunit KorB.
  
 0.883
nodQ
Bifunctional enzyme NodQ; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
    
 0.865
maeB
NADP-dependent malic enzyme.
    
 0.817
tme
NADP-dependent malic enzyme.
    
 0.817
gltB
Glutamate synthase [NADPH] large chain.
    
 0.797
nagAa
ferredoxin--NAD(P)(+) reductase; Naphthalene dioxygenase/salicylate 5-hydroxylase ferredoxin-specific.
    
 0.785
sudA
Sulfide dehydrogenase subunit alpha.
  
 0.761
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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