Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phoQVirulence sensor histidine kinase PhoQ. (466 aa)    
Predicted Functional Partners:
qseB
Transcriptional regulatory protein QseB.
 0.981
luxQ-2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 0.969
luxQ-3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 0.932
pdhB
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.910
ctrA
Cell cycle response regulator CtrA.
 
 0.775
AQ1_02569
Peptidase propeptide and YPEB domain protein.
       0.773
AQ1_02225
Blue-light-activated protein.
 
 
 0.766
ycdT
Putative diguanylate cyclase YcdT.
  
 0.753
AQ1_00830
Putative protein.
 
 0.744
ctrA-2
Cell cycle transcriptional regulator CtrA.
 
 0.723
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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