Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_02602Putative lipoprotein. (264 aa)    
Predicted Functional Partners:
mlaC
Putative phospholipid-binding protein MlaC.
 
 
 
 0.949
AQ1_00827
Putative ABC transporter-binding protein.
 
   
 0.858
mkl
Putative ribonucleotide transport ATP-binding protein mkl.
 
   
 0.649
AQ1_00664
Putative ABC transporter permease protein.
 
   
 0.618
metH-2
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
       0.613
AQ1_01363
Hypothetical protein.
   
    0.598
gltB
Glutamate synthase [NADPH] large chain.
       0.597
fur
Ferric uptake regulation protein; Belongs to the Fur family.
   
    0.535
ycgJ
Putative methyltransferase YcgJ.
       0.489
metF
5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
       0.489
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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