Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_02632DNA-binding transcriptional repressor MarR. (128 aa)    
Predicted Functional Partners:
AQ1_02631
Dipeptidyl-peptidase 6.
       0.797
opuCB
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
  
  
 0.665
pepA-2
Putative cytosol aminopeptidase; Belongs to the peptidase M17 family.
       0.650
AQ1_00047
Hypothetical protein.
  
     0.618
AQ1_01900
Hypothetical protein.
 
     0.564
AQ1_02766
Hypothetical protein.
  
     0.554
AQ1_01080
Hypothetical protein.
  
     0.505
AQ1_02366
Hypothetical protein.
  
     0.501
AQ1_02634
ethD protein.
       0.477
AQ1_01935
Hypothetical protein.
  
     0.476
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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