Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gltDGlutamate synthase [NADPH] small chain. (489 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase [NADPH] large chain.
 0.999
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
 0.998
yerD
Glutamate synthase large subunit-like protein YerD; Belongs to the glutamate synthase family.
 0.997
nagAa
ferredoxin--NAD(P)(+) reductase; Naphthalene dioxygenase/salicylate 5-hydroxylase ferredoxin-specific.
   
 0.978
AQ1_00799
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
  
 0.973
iorA
Indolepyruvate oxidoreductase subunit IorA.
   
 0.949
NDUFV2
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial.
   
 0.864
korA
2-oxoglutarate oxidoreductase subunit KorA.
    
 0.826
fdxB
2Fe-2S ferredoxin.
    
 0.821
fdxB-2
2Fe-2S ferredoxin.
    
 0.821
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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