Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGMOAlkylglycerol monooxygenase. (304 aa)    
Predicted Functional Partners:
AQ1_02770
Putative protein.
       0.799
AQ1_01594
Hypothetical protein; N-terminal double-transmembrane domain.
   
 0.678
shc
Squalene--hopene cyclase.
   
 0.678
AQ1_00333
TVP38/TMEM64 family membrane protein.
 
     0.658
AQ1_00866
Putative lipid kinase.
   
 0.643
erg3
C-5 sterol desaturase.
  
     0.640
NDUFAF6
NADH dehydrogenase (ubiquinone) complex I, assembly factor 6.
  
  0.593
crtB
Phytoene synthase.
  
  0.593
AQ1_01882
Putative phytoene synthase.
  
  0.593
AQ1_01884
Putative protein.
  
  0.593
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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