AQ1_02797 protein (alpha proteobacterium Q1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AQ1_02797

Vitamin B12-transporter protein BtuF. (278 aa)

Predicted Functional Partners:

hmuV-2

0.969

hmuU

0.897

yvrB

0.893

opuCB

0.852

lptG

0.785

AQ1_00865

0.785

AQ1_00593

0.779

fbpC2

0.771

AQ1_00587

0.750

yadH

0.732

Your Current Organism:

alpha proteobacterium Q1

NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQ1_00587	AQ1_00593	AQ1_00587	AQ1_00593	Putative ABC transporter ATP-binding protein.	Putative peptide ABC transporter periplasmic-binding protein y4tO.	0.873
AQ1_00587	AQ1_00865	AQ1_00587	AQ1_00865	Putative ABC transporter ATP-binding protein.	Lipopolysaccharide ABC transporter permease LptF.	0.990
AQ1_00587	AQ1_02797	AQ1_00587	AQ1_02797	Putative ABC transporter ATP-binding protein.	Vitamin B12-transporter protein BtuF.	0.750
AQ1_00587	fbpC2	AQ1_00587	AQ1_00283	Putative ABC transporter ATP-binding protein.	Fe(3+) ions import ATP-binding protein FbpC 2; Belongs to the ABC transporter superfamily.	0.852
AQ1_00587	hmuU	AQ1_00587	AQ1_00318	Putative ABC transporter ATP-binding protein.	Hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.599
AQ1_00587	hmuV-2	AQ1_00587	AQ1_00992	Putative ABC transporter ATP-binding protein.	Hemin import ATP-binding protein HmuV.	0.802
AQ1_00587	lptG	AQ1_00587	AQ1_00864	Putative ABC transporter ATP-binding protein.	Lipopolysaccharide export system permease protein LptG.	0.995
AQ1_00587	opuCB	AQ1_00587	AQ1_02773	Putative ABC transporter ATP-binding protein.	Glycine betaine/carnitine/choline transport system permease protein OpuCB.	0.867
AQ1_00587	yadH	AQ1_00587	AQ1_00378	Putative ABC transporter ATP-binding protein.	Inner membrane transport permease YadH.	0.868
AQ1_00587	yvrB	AQ1_00587	AQ1_00991	Putative ABC transporter ATP-binding protein.	Putative ABC transporter permease protein YvrB; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.599
AQ1_00593	AQ1_00587	AQ1_00593	AQ1_00587	Putative peptide ABC transporter periplasmic-binding protein y4tO.	Putative ABC transporter ATP-binding protein.	0.873
AQ1_00593	AQ1_00865	AQ1_00593	AQ1_00865	Putative peptide ABC transporter periplasmic-binding protein y4tO.	Lipopolysaccharide ABC transporter permease LptF.	0.818
AQ1_00593	AQ1_02797	AQ1_00593	AQ1_02797	Putative peptide ABC transporter periplasmic-binding protein y4tO.	Vitamin B12-transporter protein BtuF.	0.779
AQ1_00593	fbpC2	AQ1_00593	AQ1_00283	Putative peptide ABC transporter periplasmic-binding protein y4tO.	Fe(3+) ions import ATP-binding protein FbpC 2; Belongs to the ABC transporter superfamily.	0.867
AQ1_00593	hmuV-2	AQ1_00593	AQ1_00992	Putative peptide ABC transporter periplasmic-binding protein y4tO.	Hemin import ATP-binding protein HmuV.	0.786
AQ1_00593	lptG	AQ1_00593	AQ1_00864	Putative peptide ABC transporter periplasmic-binding protein y4tO.	Lipopolysaccharide export system permease protein LptG.	0.852
AQ1_00593	opuCB	AQ1_00593	AQ1_02773	Putative peptide ABC transporter periplasmic-binding protein y4tO.	Glycine betaine/carnitine/choline transport system permease protein OpuCB.	0.871
AQ1_00593	yadH	AQ1_00593	AQ1_00378	Putative peptide ABC transporter periplasmic-binding protein y4tO.	Inner membrane transport permease YadH.	0.858
AQ1_00865	AQ1_00587	AQ1_00865	AQ1_00587	Lipopolysaccharide ABC transporter permease LptF.	Putative ABC transporter ATP-binding protein.	0.990
AQ1_00865	AQ1_00593	AQ1_00865	AQ1_00593	Lipopolysaccharide ABC transporter permease LptF.	Putative peptide ABC transporter periplasmic-binding protein y4tO.	0.818