Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQ1_02802Heparinase II/III-like protein. (676 aa)    
Predicted Functional Partners:
purH
Bifunctional purine biosynthesis protein PurH.
       0.756
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.688
AQ1_01998
Hypothetical protein.
  
     0.614
cobT
Aerobic cobaltochelatase subunit CobT.
  
     0.604
AQ1_00947
Hypothetical protein.
  
     0.583
AQ1_00476
Protein of unknown function; FYDLN_acid.
  
     0.576
rsmB-2
Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
    0.561
AQ1_02694
Hypothetical protein.
  
     0.458
AQ1_00377
gcrA cell cycle regulator.
  
     0.451
acpP
Acyl carrier protein.
  
     0.447
Your Current Organism:
alpha proteobacterium Q1
NCBI taxonomy Id: 1492281
Other names: a. proteobacterium Q-1, alpha proteobacterium Q-1
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