STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgBGlycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (645 aa)    
Predicted Functional Partners:
ANE53160.1
Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
 
0.997
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
 0.996
ANE49422.1
Starch synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
ANE50228.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.982
glgC
Glucose-1-phosphate adenylyltransferase; Catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.979
ANE49293.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
ANE49540.1
4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.944
ANE53158.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.934
ANE53585.1
Alpha-amlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.931
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 0.914
Your Current Organism:
Flavisolibacter tropicus
NCBI taxonomy Id: 1492898
Other names: F. tropicus, Flavisolibacter sp. LCS9, Flavisolibacter tropicus Lee et al. 2016, JCM 19972, KCTC 42070, strain LCS9
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