STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK80355.1Hypothetical protein/hypothetical protein. (426 aa)    
Predicted Functional Partners:
kinE
His Kinase A (phospho-acceptor) domain-containing protein.
  
  
 0.716
ugtP
Monogalactosyldiacylglycerol synthase.
 
  
 0.634
SDL34360.1
Tetratricopeptide repeat-containing protein.
 
 
 0.630
SDL46347.1
Hypothetical protein.
 
 
 0.628
SDL17179.1
Tetratricopeptide repeat-containing protein.
  
 
 0.618
SDK85300.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
 
 0.592
pdaA_3
Polysaccharide deacetylase family sporulation protein PdaB.
  
 
 0.592
SDL13041.1
peptidoglycan-N-acetylmuramic acid deacetylase.
  
 
 0.592
SDL34458.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
 
 0.592
SDL37025.1
Intercellular adhesin biosynthesis polysaccharide N-deacetylase.
  
 
 0.592
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.