Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK84957.1 | SDK84981.1 | SAMN05216497_101241 | SAMN05216497_101242 | Zn-dependent protease (includes SpoIVFB). | Hypothetical protein. | 0.728 |
SDK84957.1 | SDK85003.1 | SAMN05216497_101241 | SAMN05216497_101243 | Zn-dependent protease (includes SpoIVFB). | Exopolysaccharide biosynthesis protein. | 0.717 |
SDK84957.1 | trmB | SAMN05216497_101241 | SAMN05216497_101240 | Zn-dependent protease (includes SpoIVFB). | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.834 |
SDK84981.1 | SDK84957.1 | SAMN05216497_101242 | SAMN05216497_101241 | Hypothetical protein. | Zn-dependent protease (includes SpoIVFB). | 0.728 |
SDK84981.1 | SDK85003.1 | SAMN05216497_101242 | SAMN05216497_101243 | Hypothetical protein. | Exopolysaccharide biosynthesis protein. | 0.966 |
SDK84981.1 | trmB | SAMN05216497_101242 | SAMN05216497_101240 | Hypothetical protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.710 |
SDK85003.1 | SDK84957.1 | SAMN05216497_101243 | SAMN05216497_101241 | Exopolysaccharide biosynthesis protein. | Zn-dependent protease (includes SpoIVFB). | 0.717 |
SDK85003.1 | SDK84981.1 | SAMN05216497_101243 | SAMN05216497_101242 | Exopolysaccharide biosynthesis protein. | Hypothetical protein. | 0.966 |
SDK85003.1 | trmB | SAMN05216497_101243 | SAMN05216497_101240 | Exopolysaccharide biosynthesis protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.698 |
SDK89583.1 | trmB | SAMN05216497_10256 | SAMN05216497_101240 | Probable zinc-ribbon domain-containing protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.668 |
SDK97708.1 | trmB | SAMN05216497_103169 | SAMN05216497_101240 | Hypothetical protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.682 |
SDK99337.1 | rpmD | SAMN05216497_10423 | SAMN05216497_11319 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Large subunit ribosomal protein L30. | 0.922 |
SDK99337.1 | trmB | SAMN05216497_10423 | SAMN05216497_101240 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.771 |
SDK99337.1 | trmD | SAMN05216497_10423 | SAMN05216497_10456 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.643 |
SDK99337.1 | truB | SAMN05216497_10423 | SAMN05216497_10484 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.954 |
rpmD | SDK99337.1 | SAMN05216497_11319 | SAMN05216497_10423 | Large subunit ribosomal protein L30. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.922 |
rpmD | trmB | SAMN05216497_11319 | SAMN05216497_101240 | Large subunit ribosomal protein L30. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.734 |
rpmD | trmD | SAMN05216497_11319 | SAMN05216497_10456 | Large subunit ribosomal protein L30. | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.782 |
rpmD | truB | SAMN05216497_11319 | SAMN05216497_10484 | Large subunit ribosomal protein L30. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.802 |
serS | trmB | SAMN05216497_11947 | SAMN05216497_101240 | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.704 |
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