STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK90386.1Hypothetical protein. (684 aa)    
Predicted Functional Partners:
SDK90350.1
Type IV pilus assembly protein PilO.
 
     0.957
SDK90332.1
Fimbrial assembly protein (PilN).
 
     0.955
SDK90417.1
Von Willebrand factor type A domain-containing protein.
 
     0.912
SDK90310.1
Type IV pilus assembly protein PilM.
 
     0.851
SDK90366.1
Hypothetical protein.
       0.839
SDK90404.1
Hypothetical protein.
       0.762
SDK97244.1
Hypothetical protein.
  
     0.709
SDK90235.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
       0.558
SDK90295.1
Type IV pilus assembly protein PilA.
 
     0.551
SDK90272.1
Type II secretion system protein F (GspF).
 
     0.511
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.