Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL16776.1 | pyrB | SAMN05216497_11024 | SAMN05216497_102140 | Dihydropyrimidinase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.990 |
SDL16776.1 | pyrC | SAMN05216497_11024 | SAMN05216497_102142 | Dihydropyrimidinase. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.584 |
SDL16776.1 | pyrD | SAMN05216497_11024 | SAMN05216497_102145 | Dihydropyrimidinase. | Dihydroorotate oxidase B, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.935 |
SDL16776.1 | pyrE | SAMN05216497_11024 | SAMN05216497_102146 | Dihydropyrimidinase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.877 |
SDL16776.1 | pyrF | SAMN05216497_11024 | SAMN05216497_102143 | Dihydropyrimidinase. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.829 |
SDL16776.1 | pyrI | SAMN05216497_11024 | SAMN05216497_102141 | Dihydropyrimidinase. | Aspartate carbamoyltransferase regulatory subunit. | 0.440 |
SDL16776.1 | pyrK_1 | SAMN05216497_11024 | SAMN05216497_102144 | Dihydropyrimidinase. | Dihydroorotate oxidase B, electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.840 |
SDL16776.1 | pyrR | SAMN05216497_11024 | SAMN05216497_10670 | Dihydropyrimidinase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. | 0.903 |
SDL16776.1 | uraA | SAMN05216497_11024 | SAMN05216497_10671 | Dihydropyrimidinase. | Uracil permease. | 0.825 |
SDL31170.1 | pyrB | SAMN05216497_11841 | SAMN05216497_102140 | Carbamate kinase; Belongs to the carbamate kinase family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.891 |
SDL31170.1 | pyrI | SAMN05216497_11841 | SAMN05216497_102141 | Carbamate kinase; Belongs to the carbamate kinase family. | Aspartate carbamoyltransferase regulatory subunit. | 0.863 |
pyrB | SDL16776.1 | SAMN05216497_102140 | SAMN05216497_11024 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Dihydropyrimidinase. | 0.990 |
pyrB | SDL31170.1 | SAMN05216497_102140 | SAMN05216497_11841 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Carbamate kinase; Belongs to the carbamate kinase family. | 0.891 |
pyrB | pyrC | SAMN05216497_102140 | SAMN05216497_102142 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.999 |
pyrB | pyrD | SAMN05216497_102140 | SAMN05216497_102145 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Dihydroorotate oxidase B, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.996 |
pyrB | pyrE | SAMN05216497_102140 | SAMN05216497_102146 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.990 |
pyrB | pyrF | SAMN05216497_102140 | SAMN05216497_102143 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.995 |
pyrB | pyrI | SAMN05216497_102140 | SAMN05216497_102141 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Aspartate carbamoyltransferase regulatory subunit. | 0.999 |
pyrB | pyrK_1 | SAMN05216497_102140 | SAMN05216497_102144 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Dihydroorotate oxidase B, electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.981 |
pyrB | pyrR | SAMN05216497_102140 | SAMN05216497_10670 | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. | 0.990 |
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