STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK91512.1Putative peptidoglycan binding domain-containing protein. (454 aa)    
Predicted Functional Partners:
SDK91501.1
Hypothetical protein.
 
     0.902
SDK91482.1
Subtilase family protein; Belongs to the peptidase S8 family.
  
 0.887
SDK92346.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.616
ssb_1
Single-stranded DNA-binding protein.
  
     0.608
SDL12901.1
Stage V sporulation protein AD.
  
   
 0.606
SDL37818.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.585
spoIIID
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
   
 0.520
SDK96703.1
Stage II sporulation protein P.
  
   
 0.517
SDL19304.1
Stage II sporulation protein R.
  
     0.512
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.509
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
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