STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK94849.1NADPH-dependent FMN reductase. (197 aa)    
Predicted Functional Partners:
SDK80990.1
Putative serine protein kinase, PrkA.
   
    0.602
SDL42445.1
Pyridine nucleotide-disulphide oxidoreductase.
  
 
  0.583
SDK94871.1
UV DNA damage endonuclease.
  
    0.559
SDK94802.1
Protein of unknown function.
       0.542
SDK94831.1
5-methylcytosine-specific restriction enzyme subunit McrC.
       0.542
SDL37337.1
Carbon-monoxide dehydrogenase catalytic subunit.
  
     0.508
SDK80847.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
 
  
  0.502
fprA1
Flavorubredoxin.
 
 
  0.472
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
   
    0.447
SDK94955.1
Hypothetical protein.
    
  0.446
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
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