Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK95979.1 | SDK96026.1 | SAMN05216497_10377 | SAMN05216497_10379 | Rod shape-determining protein MreB. | Rod shape-determining protein MreD. | 0.941 |
SDK95979.1 | ftsI | SAMN05216497_10377 | SAMN05216497_10380 | Rod shape-determining protein MreB. | Penicillin-binding protein 2. | 0.963 |
SDK95979.1 | maf | SAMN05216497_10377 | SAMN05216497_10375 | Rod shape-determining protein MreB. | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.818 |
SDK95979.1 | minC | SAMN05216497_10377 | SAMN05216497_10381 | Rod shape-determining protein MreB. | Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.805 |
SDK95979.1 | minD | SAMN05216497_10377 | SAMN05216497_10382 | Rod shape-determining protein MreB. | Septum site-determining protein MinD. | 0.823 |
SDK95979.1 | mreC | SAMN05216497_10377 | SAMN05216497_10378 | Rod shape-determining protein MreB. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.997 |
SDK95979.1 | penA_2 | SAMN05216497_10377 | SAMN05216497_10650 | Rod shape-determining protein MreB. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.411 |
SDK95979.1 | radC_1 | SAMN05216497_10377 | SAMN05216497_10376 | Rod shape-determining protein MreB. | DNA replication and repair protein RadC; Belongs to the UPF0758 family. | 0.904 |
SDK95979.1 | rodA | SAMN05216497_10377 | SAMN05216497_10384 | Rod shape-determining protein MreB. | Rod shape determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.942 |
SDK96026.1 | SDK95979.1 | SAMN05216497_10379 | SAMN05216497_10377 | Rod shape-determining protein MreD. | Rod shape-determining protein MreB. | 0.941 |
SDK96026.1 | ftsI | SAMN05216497_10379 | SAMN05216497_10380 | Rod shape-determining protein MreD. | Penicillin-binding protein 2. | 0.908 |
SDK96026.1 | maf | SAMN05216497_10379 | SAMN05216497_10375 | Rod shape-determining protein MreD. | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.830 |
SDK96026.1 | minC | SAMN05216497_10379 | SAMN05216497_10381 | Rod shape-determining protein MreD. | Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.956 |
SDK96026.1 | minD | SAMN05216497_10379 | SAMN05216497_10382 | Rod shape-determining protein MreD. | Septum site-determining protein MinD. | 0.911 |
SDK96026.1 | mreB_1 | SAMN05216497_10379 | SAMN05216497_11134 | Rod shape-determining protein MreD. | Rod shape-determining protein MreB. | 0.652 |
SDK96026.1 | mreC | SAMN05216497_10379 | SAMN05216497_10378 | Rod shape-determining protein MreD. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.995 |
SDK96026.1 | penA_2 | SAMN05216497_10379 | SAMN05216497_10650 | Rod shape-determining protein MreD. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.619 |
SDK96026.1 | radC_1 | SAMN05216497_10379 | SAMN05216497_10376 | Rod shape-determining protein MreD. | DNA replication and repair protein RadC; Belongs to the UPF0758 family. | 0.866 |
SDK96026.1 | rodA | SAMN05216497_10379 | SAMN05216497_10384 | Rod shape-determining protein MreD. | Rod shape determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.796 |
ftsI | SDK95979.1 | SAMN05216497_10380 | SAMN05216497_10377 | Penicillin-binding protein 2. | Rod shape-determining protein MreB. | 0.963 |
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