STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL00649.1Hypothetical protein. (421 aa)    
Predicted Functional Partners:
SDL00671.1
Uncharacterized membrane protein.
 
  
 0.918
SDL00633.1
UbiA prenyltransferase family protein; Belongs to the UbiA prenyltransferase family.
 
  
 0.752
SDL25188.1
ABC-2 type transport system permease protein.
  
     0.716
SDL00688.1
Aspartate aminotransferase.
       0.630
SDL39045.1
Hypothetical protein.
  
     0.620
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.616
SDL29756.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.583
SDL28405.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.578
SDL43401.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
  
 
 0.578
SDL37315.1
Protein of unknown function.
 
     0.476
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.