STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL06614.1Ca2+-transporting ATPase. (853 aa)    
Predicted Functional Partners:
SDL06597.1
Manganese-dependent inorganic pyrophosphatase.
    
  0.919
SDK84083.1
Putative Mg2+ transporter-C (MgtC) family protein.
  
 
 0.636
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
 0.520
SDL34805.1
N-acetylmuramoyl-L-alanine amidase.
   
 0.510
ntpK
V/A-type H+-transporting ATPase subunit K; Belongs to the V-ATPase proteolipid subunit family.
   
 0.509
SDK91482.1
Subtilase family protein; Belongs to the peptidase S8 family.
   
 
 0.489
SDK88951.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.466
SDK82028.1
V/A-type H+-transporting ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.
    
 0.442
SDK91761.1
V/A-type H+-transporting ATPase subunit I.
    
 0.442
SDK90065.1
Hypothetical protein.
   
   0.434
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.