STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL11265.1Hypothetical protein. (1202 aa)    
Predicted Functional Partners:
SDL11228.1
Phosphoadenosine phosphosulfate reductase.
 
     0.942
SDL11244.1
Protein of unknown function.
 
     0.942
SDL11358.1
DNA sulfur modification protein DndD.
 
     0.901
SDL11312.1
DNA phosphorothioation system restriction enzyme.
 
    0.897
SDL11281.1
Cysteine desulfurase family protein.
 
     0.760
SDL11416.1
Hypothetical protein.
 
     0.716
SDL11384.1
Hypothetical protein.
       0.589
SDL11330.1
Hypothetical protein.
       0.566
SDK86095.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
  
     0.558
SDK95005.1
Hypothetical protein.
 
     0.494
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.