STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yunBSporulation protein YunB. (212 aa)    
Predicted Functional Partners:
ytfJ
Sporulation protein YtfJ.
  
   
 0.689
SDL12860.1
Penicillin-binding protein 1A.
       0.674
SDK96944.1
Similar to stage IV sporulation protein.
  
     0.621
SDL07778.1
Hypothetical protein.
  
     0.608
SDK88719.1
Hypothetical protein.
  
     0.583
SDL19304.1
Stage II sporulation protein R.
  
     0.541
SDK83526.1
Spore coat protein JB.
  
    0.529
SDK89422.1
Hypothetical protein.
  
     0.529
SDL21113.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.504
SDL07852.1
Stage III sporulation protein AC.
  
     0.490
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.