Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL12860.1 | murAA | SAMN05216497_10832 | SAMN05216497_11138 | Penicillin-binding protein 1A. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.458 |
SDL12860.1 | spoIIQ | SAMN05216497_10832 | SAMN05216497_11136 | Penicillin-binding protein 1A. | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | 0.520 |
SDL18786.1 | SDL18827.1 | SAMN05216497_11137 | SAMN05216497_11139 | Stage II sporulation protein D. | Hypothetical protein. | 0.688 |
SDL18786.1 | mreB_1 | SAMN05216497_11137 | SAMN05216497_11134 | Stage II sporulation protein D. | Rod shape-determining protein MreB. | 0.565 |
SDL18786.1 | murAA | SAMN05216497_11137 | SAMN05216497_11138 | Stage II sporulation protein D. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.737 |
SDL18786.1 | spoIIID | SAMN05216497_11137 | SAMN05216497_11135 | Stage II sporulation protein D. | Putative DeoR family transcriptional regulator, stage III sporulation protein D. | 0.841 |
SDL18786.1 | spoIIQ | SAMN05216497_11137 | SAMN05216497_11136 | Stage II sporulation protein D. | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | 0.785 |
SDL18827.1 | SDL18786.1 | SAMN05216497_11139 | SAMN05216497_11137 | Hypothetical protein. | Stage II sporulation protein D. | 0.688 |
SDL18827.1 | murAA | SAMN05216497_11139 | SAMN05216497_11138 | Hypothetical protein. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.810 |
SDL18827.1 | spoIIID | SAMN05216497_11139 | SAMN05216497_11135 | Hypothetical protein. | Putative DeoR family transcriptional regulator, stage III sporulation protein D. | 0.469 |
SDL18827.1 | spoIIQ | SAMN05216497_11139 | SAMN05216497_11136 | Hypothetical protein. | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | 0.579 |
mreB_1 | SDL18786.1 | SAMN05216497_11134 | SAMN05216497_11137 | Rod shape-determining protein MreB. | Stage II sporulation protein D. | 0.565 |
mreB_1 | murAA | SAMN05216497_11134 | SAMN05216497_11138 | Rod shape-determining protein MreB. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.648 |
mreB_1 | spoIIID | SAMN05216497_11134 | SAMN05216497_11135 | Rod shape-determining protein MreB. | Putative DeoR family transcriptional regulator, stage III sporulation protein D. | 0.713 |
mreB_1 | spoIIQ | SAMN05216497_11134 | SAMN05216497_11136 | Rod shape-determining protein MreB. | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | 0.616 |
murAA | SDL12860.1 | SAMN05216497_11138 | SAMN05216497_10832 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | Penicillin-binding protein 1A. | 0.458 |
murAA | SDL18786.1 | SAMN05216497_11138 | SAMN05216497_11137 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | Stage II sporulation protein D. | 0.737 |
murAA | SDL18827.1 | SAMN05216497_11138 | SAMN05216497_11139 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | Hypothetical protein. | 0.810 |
murAA | mreB_1 | SAMN05216497_11138 | SAMN05216497_11134 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | Rod shape-determining protein MreB. | 0.648 |
murAA | spoIIID | SAMN05216497_11138 | SAMN05216497_11135 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | Putative DeoR family transcriptional regulator, stage III sporulation protein D. | 0.544 |
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