STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL21391.1Nitrogen regulatory protein P-II family. (98 aa)    
Predicted Functional Partners:
SDL21410.1
Protein of unknown function.
 
     0.942
SDK81137.1
Hypothetical protein.
    
 
 0.742
SDL13424.1
Tetratricopeptide repeat-containing protein.
    
 
 0.742
SDL16557.1
Tetratricopeptide repeat-containing protein.
    
 
 0.742
SDL16577.1
Tetratricopeptide repeat-containing protein.
    
 
 0.742
SDL17179.1
Tetratricopeptide repeat-containing protein.
    
 
 0.742
SDL34360.1
Tetratricopeptide repeat-containing protein.
    
 
 0.742
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.708
nifH1
Nitrogenase iron protein NifH; Belongs to the NifH/BchL/ChlL family.
 
  
 0.664
purL
Phosphoribosylformylglycinamidine synthase.
     
 0.564
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.