STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL29213.1Branched-chain amino acid aminotransferase. (269 aa)    
Predicted Functional Partners:
SDL29129.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.940
SDL38301.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.926
SDL23587.1
L-threonine ammonia-lyase.
  
 
 0.922
hom_2
Homoserine dehydrogenase.
  
 
 0.914
cphA
Cyanophycin synthetase.
 
 
 0.911
megL_1
Methionine-gamma-lyase.
   
 0.884
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
  
 
 0.881
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
   
 0.872
dpaL
L-threonine ammonia-lyase.
  
 
 0.863
porA_3
Pyruvate ferredoxin oxidoreductase, alpha subunit.
  
 
  0.845
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
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