STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speA_1Arginine/lysine/ornithine decarboxylase. (471 aa)    
Predicted Functional Partners:
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
 
  0.884
SDL39602.1
Inhibitor of sigma-G Gin.
       0.849
SDL00825.1
Cystathionine beta-lyase family protein involved in aluminum resistance.
 
   
 0.723
SDL39645.1
Uncharacterized protein YaaQ.
  
    0.715
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
 
 0.709
tpl_1
Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development).
  
    0.698
abgB_1
Metal-dependent amidase/aminoacylase/carboxypeptidase; Belongs to the peptidase M20A family.
       0.694
dnaX_2
DNA polymerase-3 subunit delta'.
       0.686
SDL39687.1
Copper chaperone CopZ.
       0.679
argH
Argininosuccinate lyase.
     
 0.646
Your Current Organism:
Clostridium cochlearium
NCBI taxonomy Id: 1494
Other names: ATCC 17787, BCRC 14471, Bacillus cochlearius, C. cochlearium, CCRC 14471, CCRC:14471, CCUG 31665, CIP 104319, Clostridium cochlearum, Clostridium lentoputrescens, NCCB 73036, NCIMB 10633, NCTC 13027
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