STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000934725_02431Unannotated protein. (457 aa)    
Predicted Functional Partners:
GCA_000934725_00294
Unannotated protein.
  
  
 0.902
GCA_000934725_00295
Unannotated protein.
   
  
 0.896
GCA_000934725_03335
Unannotated protein.
   
    0.826
GCA_000934725_02387
Unannotated protein.
   
  
 0.726
GCA_000934725_03889
Unannotated protein.
  
  
 0.723
GCA_000934725_00869
Unannotated protein.
  
  
 0.707
GCA_000934725_02149
Unannotated protein.
   
  
 0.647
GCA_000934725_00031
Unannotated protein.
   
    0.638
GCA_000934725_02661
Unannotated protein.
  
   
 0.630
GCA_000934725_02430
Unannotated protein.
       0.622
Your Current Organism:
Methyloterricola oryzae
NCBI taxonomy Id: 1495050
Other names: LMG 29185, LMG:29185, M. oryzae, Methylococcaceae bacterium 73a, Methyloterricola oryzae Frindte et al. 2017, VKM B-2986, strain 73a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.