Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMH93855.1 | AMH93859.1 | AR505_0133 | AR505_0137 | Hypothetical protein. | RNA-binding protein. | 0.865 |
| AMH93855.1 | rsmA | AR505_0133 | AR505_0132 | Hypothetical protein. | Dimethyladenosine transferase KsgA; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.874 |
| AMH93859.1 | AMH93855.1 | AR505_0137 | AR505_0133 | RNA-binding protein. | Hypothetical protein. | 0.865 |
| AMH93859.1 | AMH95332.1 | AR505_0137 | AR505_1617 | RNA-binding protein. | DNA/RNA-binding protein. | 0.902 |
| AMH93859.1 | rps11 | AR505_0137 | AR505_1440 | RNA-binding protein. | Ribosomal protein S11P Rps11p; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| AMH93859.1 | rps13 | AR505_0137 | AR505_1442 | RNA-binding protein. | Ribosomal protein S13P Rps13p; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. | 0.948 |
| AMH93859.1 | rps15 | AR505_0137 | AR505_0118 | RNA-binding protein. | Ribosomal protein S15P Rps15p. | 0.990 |
| AMH93859.1 | rps2 | AR505_0137 | AR505_1671 | RNA-binding protein. | Ribosomal protein S2P Rps2p; Belongs to the universal ribosomal protein uS2 family. | 0.720 |
| AMH93859.1 | rps5 | AR505_0137 | AR505_0238 | RNA-binding protein. | Ribosomal protein S5P Rps5p; With S4 and S12 plays an important role in translational accuracy. | 0.999 |
| AMH93859.1 | rps7 | AR505_0137 | AR505_1456 | RNA-binding protein. | Ribosomal protein S7P Rps7p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| AMH93859.1 | rsmA | AR505_0137 | AR505_0132 | RNA-binding protein. | Dimethyladenosine transferase KsgA; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.885 |
| AMH95332.1 | AMH93859.1 | AR505_1617 | AR505_0137 | DNA/RNA-binding protein. | RNA-binding protein. | 0.902 |
| AMH95332.1 | rps10 | AR505_1617 | AR505_1453 | DNA/RNA-binding protein. | Ribosomal protein S10P Rps10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| AMH95332.1 | rps11 | AR505_1617 | AR505_1440 | DNA/RNA-binding protein. | Ribosomal protein S11P Rps11p; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| AMH95332.1 | rps13 | AR505_1617 | AR505_1442 | DNA/RNA-binding protein. | Ribosomal protein S13P Rps13p; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. | 0.999 |
| AMH95332.1 | rps15 | AR505_1617 | AR505_0118 | DNA/RNA-binding protein. | Ribosomal protein S15P Rps15p. | 0.999 |
| AMH95332.1 | rps2 | AR505_1617 | AR505_1671 | DNA/RNA-binding protein. | Ribosomal protein S2P Rps2p; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| AMH95332.1 | rps5 | AR505_1617 | AR505_0238 | DNA/RNA-binding protein. | Ribosomal protein S5P Rps5p; With S4 and S12 plays an important role in translational accuracy. | 0.999 |
| AMH95332.1 | rps7 | AR505_1617 | AR505_1456 | DNA/RNA-binding protein. | Ribosomal protein S7P Rps7p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| AMH95332.1 | rsmA | AR505_1617 | AR505_0132 | DNA/RNA-binding protein. | Dimethyladenosine transferase KsgA; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.913 |
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