STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMH94838.1Aspartokinase beta subunit. (228 aa)    
Predicted Functional Partners:
AMH94837.1
Hypothetical protein.
       0.586
gltX
glutamyl-tRNA synthetase GltX; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
 
     0.586
nusA
Transcription elongation factor NusA-like protein; Participates in transcription termination. Belongs to the NusA family.
  
     0.564
AMH94195.1
2,3-bisphosphoglycerate-independent phosphoglycerate mutase ApgM.
  
     0.541
AMH95352.1
Methanogeneis marker protein 11.
  
     0.508
AMH95350.1
Fe-S oxidoreductase.
  
     0.478
AMH93933.1
Hypothetical protein.
  
     0.473
AMH94994.1
Iron-sulfur cluster assembly protein.
  
     0.456
AMH93871.1
Hypothetical protein.
  
     0.428
AMH95320.1
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit.
  
     0.414
Your Current Organism:
methanogenic archaeon ISO4H5
NCBI taxonomy Id: 1495144
Other names: Thermoplasmatales archaeon enrichment culture clone ISO4-H5, m. archaeon ISO4-H5, methanogenic archaeon ISO4-H5, methanogenic archaeon mixed culture ISO4-H5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.