STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMH94929.1TPR repeat-containing protein. (492 aa)    
Predicted Functional Partners:
AMH94928.1
TPR repeat-containing protein.
    
0.800
AMH94927.1
TPR repeat-containing protein.
 
    
0.770
AMH94943.1
Chaperone protein DnaK2; Belongs to the heat shock protein 70 family.
  
 0.747
rpoD
DNA-directed RNA polymerase subunit D RpoD; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.
   
 0.583
AMH93776.1
DNA-directed RNA polymerase subunit B RpoB; Belongs to the RNA polymerase beta chain family.
  
 0.582
AMH94966.1
DNA helicase.
 
 
 0.575
AMH93920.1
alanyl-tRNA synthetase AlaS1.
   
 0.564
AMH95163.1
alanyl-tRNA synthetase AlaS2.
   
 0.564
AMH93775.1
DNA-directed RNA polymerase subunit H RpoH.
   
 0.559
AMH95391.1
GTPase.
  
 0.559
Your Current Organism:
methanogenic archaeon ISO4H5
NCBI taxonomy Id: 1495144
Other names: Thermoplasmatales archaeon enrichment culture clone ISO4-H5, m. archaeon ISO4-H5, methanogenic archaeon ISO4-H5, methanogenic archaeon mixed culture ISO4-H5
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