STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOY75498.1Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)    
Predicted Functional Partners:
AOY75995.1
Agmatinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the arginase family.
 
 
 0.938
AOY75472.1
Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.912
AOY78133.1
Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.904
arcA
Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.822
argH
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.813
argH-2
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.813
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 0.668
AOY77166.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.564
AOY75499.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.535
AOY76945.1
Thioether cross-link-forming SCIFF peptide maturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.492
Your Current Organism:
Clostridium formicaceticum
NCBI taxonomy Id: 1497
Other names: ATCC 27076, C. formicaceticum, Clostridium formicoaceticum, DSM 92
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