STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DO97_07690Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)    
Predicted Functional Partners:
DO97_17595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.930
DO97_12585
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
    
 0.923
DO97_05095
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.824
DO97_03945
protein-PII uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.810
DO97_11660
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.799
DO97_09285
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.798
DO97_06005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.791
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.762
DO97_17160
Catabolite gene activator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
DO97_02460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.755
Your Current Organism:
Neosynechococcus sphagnicola
NCBI taxonomy Id: 1497020
Other names: Chroococcales cyanobacterium sy1, N. sphagnicola sy1, Neosynechococcus sphagnicola sy1
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