STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcLRibulose 1,5-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. (476 aa)    
Predicted Functional Partners:
DO97_09575
Ribulose 1,5-bisphosphate carboxylase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
DO97_20925
Cytochrome C biogenesis protein CcmM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.983
DO97_09570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.965
DO97_04160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.941
DO97_20510
Phosphoribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.936
DO97_07335
Phosphoribulokinase; Catalyzes a reaction in which the CO2 acceptor molecule, RuBP, is generated via the phosphorylation of ribulose 5-phosphate with ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.910
DO97_08435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.844
DO97_20930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.819
DO97_19365
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.
    
 
 0.817
DO97_21385
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.817
Your Current Organism:
Neosynechococcus sphagnicola
NCBI taxonomy Id: 1497020
Other names: Chroococcales cyanobacterium sy1, N. sphagnicola sy1, Neosynechococcus sphagnicola sy1
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