STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DO97_15350Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (437 aa)    
Predicted Functional Partners:
DO97_12585
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
    
   0.769
DO97_20860
Zinc metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.651
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
 
  0.605
DO97_03340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.572
DO97_03345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.572
DO97_03350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.572
DO97_11115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.572
DO97_12145
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.572
DO97_15235
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.572
DO97_19250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.572
Your Current Organism:
Neosynechococcus sphagnicola
NCBI taxonomy Id: 1497020
Other names: Chroococcales cyanobacterium sy1, N. sphagnicola sy1, Neosynechococcus sphagnicola sy1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.