STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DO97_17620DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (888 aa)    
Predicted Functional Partners:
DO97_17210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.589
DO97_02845
Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
 
      0.501
DO97_04970
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.495
DO97_17625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.465
DO97_02925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
DO97_17615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
DO97_03330
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.448
DO97_17590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
Your Current Organism:
Neosynechococcus sphagnicola
NCBI taxonomy Id: 1497020
Other names: Chroococcales cyanobacterium sy1, N. sphagnicola sy1, Neosynechococcus sphagnicola sy1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.