DO97_18875 protein (Neosynechococcus sphagnicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DO97_18875

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (298 aa)

Predicted Functional Partners:

DO97_18880

0.999

DO97_04320

0.997

DO97_16705

0.997

DO97_06775

0.994

DO97_12250

0.991

DO97_18205

0.990

DO97_06780

0.976

DO97_12255

0.941

DO97_12825

0.865

DO97_06795

0.815

Your Current Organism:

Neosynechococcus sphagnicola

NCBI taxonomy Id: 1497020
Other names: Chroococcales cyanobacterium sy1, N. sphagnicola sy1, Neosynechococcus sphagnicola sy1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 5

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
DO97_04320	DO97_06780	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
DO97_04320	DO97_06795	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
DO97_04320	DO97_12250	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis anti-sigma factor FlgM; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.961
DO97_04320	DO97_12255	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
DO97_04320	DO97_16705	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.895
DO97_04320	DO97_18205	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
DO97_04320	DO97_18875	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.997
DO97_04320	DO97_18880	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
DO97_06775	DO97_06780	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
DO97_06775	DO97_06795	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
DO97_06775	DO97_12250	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis anti-sigma factor FlgM; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.869
DO97_06775	DO97_12255	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
DO97_06775	DO97_12825	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
DO97_06775	DO97_16705	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.852
DO97_06775	DO97_18205	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
DO97_06775	DO97_18875	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.994
DO97_06775	DO97_18880	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
DO97_06780	DO97_04320	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
DO97_06780	DO97_06775	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
DO97_06780	DO97_06795	Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996