STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EP56_02680MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)    
Predicted Functional Partners:
EP56_04280
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.621
EP56_04510
Heptaprenyl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.604
EP56_02685
Peptidase M29; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
EP56_12220
Threonine aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.530
EP56_03970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.515
EP56_13100
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.487
EP56_02675
Rod-share determining protein MreBH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
EP56_04115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.475
Your Current Organism:
Listeriaceae bacterium FSLA50209
NCBI taxonomy Id: 1497679
Other names: L. bacterium FSL A5-0209, Listeriaceae bacterium FSL A5-0209
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.