STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EP56_07695Holin; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)    
Predicted Functional Partners:
EP56_07690
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
EP56_07685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
EP56_07700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.496
EP56_07710
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.447
EP56_07715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.440
EP56_07705
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.425
Your Current Organism:
Listeriaceae bacterium FSLA50209
NCBI taxonomy Id: 1497679
Other names: L. bacterium FSL A5-0209, Listeriaceae bacterium FSL A5-0209
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.