STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EP56_10585Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (767 aa)    
Predicted Functional Partners:
EP56_11665
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
 0.995
EP56_10780
Chitin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.988
EP56_10825
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.971
EP56_11400
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.894
EP56_00910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.887
EP56_10765
Cytochrome O ubiquinol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.829
EP56_10775
Quinol oxidase subunit 2; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water. Subunit II transfers the electrons from a quinol to the binuclear center of the catalytic subunit I.
   
 0.828
EP56_12300
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.805
EP56_10070
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.804
smc
Chromosome segregation protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
 
 0.797
Your Current Organism:
Listeriaceae bacterium FSLA50209
NCBI taxonomy Id: 1497679
Other names: L. bacterium FSL A5-0209, Listeriaceae bacterium FSL A5-0209
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