STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerC_3Tyrosine recombinase XerC. (294 aa)    
Predicted Functional Partners:
gph_2
Phosphoglycolate phosphatase.
  
     0.688
GCA_000746205_01089
Hypothetical protein.
  
     0.578
smc_5
Chromosome partition protein Smc.
  
     0.566
GCA_000746205_01168
Hypothetical protein.
  
     0.553
GCA_000746205_00226
Hypothetical protein.
 
     0.552
GCA_000746205_00230
Hypothetical protein.
 
     0.532
GCA_000746205_01054
Hypothetical protein.
  
     0.528
mnhA1
Na(+)/H(+) antiporter subunit A1.
 
     0.510
GCA_000746205_01141
Hypothetical protein.
  
     0.501
GCA_000746205_01203
Hypothetical protein.
  
     0.495
Your Current Organism:
Halorubrum sp. BV1
NCBI taxonomy Id: 1498500
Other names: H. sp. BV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.