STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapD2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. (279 aa)    
Predicted Functional Partners:
dapB
4-hydroxy-tetrahydrodipicolinate reductase.
 
 
 0.997
dapF
Diaminopimelate epimerase.
 
  
 0.966
lysA
Diaminopimelate decarboxylase.
 
  
 0.947
dapA
4-hydroxy-tetrahydrodipicolinate synthase.
 
  
 0.905
argE_2
Acetylornithine deacetylase.
     
 0.895
lysJ
[LysW]-aminoadipate semialdehyde transaminase.
 
  
 0.720
GCA_000746205_02597
Aspartate kinase.
 
  
 0.719
rseP
Regulator of sigma-E protease RseP.
  
    0.695
iaaH
Indole-3-acetyl-aspartic acid hydrolase.
 
  
 0.672
asd
Aspartate-semialdehyde dehydrogenase.
 
  
 0.588
Your Current Organism:
Halorubrum sp. BV1
NCBI taxonomy Id: 1498500
Other names: H. sp. BV1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.