STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
assAPutative alkylsuccinate synthase alpha-subunit. (835 aa)    
Predicted Functional Partners:
ER57_00224
Glycyl-radical activating protein.
 
 0.976
ER57_04125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.771
ER57_00220
Mmg/PrpD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.759
ER57_00665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.742
ER57_01310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.742
ER57_07785
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.730
ER57_10660
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.723
ER57_10900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.721
ER57_11880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.714
ER57_00440
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.700
Your Current Organism:
Smithella sp. SCADC
NCBI taxonomy Id: 1499107
Other names: S. sp. SCADC, Smithella sp. enrichment culture clone SCADC
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