STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ER57_02625Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)    
Predicted Functional Partners:
pcm
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
     
 0.827
ER57_13405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.778
ER57_02635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
ER57_11255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.689
pheS
phenylalanyl-tRNA synthetase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
    
  0.620
ER57_04740
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.549
ER57_02500
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.543
ER57_02620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.543
ER57_18365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.500
ddl
Hypothetical protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
 0.499
Your Current Organism:
Smithella sp. SCADC
NCBI taxonomy Id: 1499107
Other names: S. sp. SCADC, Smithella sp. enrichment culture clone SCADC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.