STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ER57_03065Translation factor Sua5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUA5 family. (202 aa)    
Predicted Functional Partners:
ER57_12915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.838
tsaD
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
 
 0.800
ER57_01005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.740
ER57_11435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.626
ER57_17210
acyl-CoA N-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.613
ER57_15185
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.600
ER57_15750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.600
prmC
Hypothetical protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
 
  
 0.557
ER57_03060
Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alpha-IPM synthase/homocitrate synthase family.
     
 0.452
ER57_03035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.433
Your Current Organism:
Smithella sp. SCADC
NCBI taxonomy Id: 1499107
Other names: S. sp. SCADC, Smithella sp. enrichment culture clone SCADC
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.