STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ER57_03900Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)    
Predicted Functional Partners:
ER57_10680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.975
ER57_10885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
      0.895
ER57_18140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.746
ER57_18485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.626
ER57_06635
Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.587
ER57_03905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.573
ER57_08605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
ER57_18605
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
ER57_06640
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.449
Your Current Organism:
Smithella sp. SCADC
NCBI taxonomy Id: 1499107
Other names: S. sp. SCADC, Smithella sp. enrichment culture clone SCADC
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