STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ER57_04440Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)    
Predicted Functional Partners:
ER57_10740
HemD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.801
ER57_14220
Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.692
ER57_05140
High molecular weight rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.683
ER57_12415
Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.680
ER57_10535
Heterodisulfide reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.661
ER57_10570
Heterodisulfide reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.659
ER57_04230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.650
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
  
 
 0.643
ER57_11775
Hypothetical protein; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate.
    
 0.641
ER57_03365
Cobinamide adenolsyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
    
 0.636
Your Current Organism:
Smithella sp. SCADC
NCBI taxonomy Id: 1499107
Other names: S. sp. SCADC, Smithella sp. enrichment culture clone SCADC
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