STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ER57_09555Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)    
Predicted Functional Partners:
tatC
Preprotein translocase subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
 
 0.989
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.924
ER57_00780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.900
ER57_09560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.673
ER57_04415
Amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.470
ER57_09565
Histidinol phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.460
ER57_03315
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.416
ER57_03320
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.416
ER57_09930
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.416
ER57_13130
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.416
Your Current Organism:
Smithella sp. SCADC
NCBI taxonomy Id: 1499107
Other names: S. sp. SCADC, Smithella sp. enrichment culture clone SCADC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.