STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ER57_10925Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)    
Predicted Functional Partners:
ER57_17930
N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.836
ER57_18445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.721
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.700
ER57_10370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.625
ER57_11990
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.625
ER57_13815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.625
ER57_11100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.602
ER57_04560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.564
cmk
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
ER57_15775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.550
Your Current Organism:
Smithella sp. SCADC
NCBI taxonomy Id: 1499107
Other names: S. sp. SCADC, Smithella sp. enrichment culture clone SCADC
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