STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ER57_11435Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)    
Predicted Functional Partners:
tsaD
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
 
 0.882
ER57_11430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.809
ER57_01005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.796
cysS-2
cysteinyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.750
ER57_16905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
 
 
  0.737
ER57_11425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.712
ER57_12915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.653
ER57_11420
PTS fructose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.651
ER57_16980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.647
argD
Acetylornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
    
 0.645
Your Current Organism:
Smithella sp. SCADC
NCBI taxonomy Id: 1499107
Other names: S. sp. SCADC, Smithella sp. enrichment culture clone SCADC
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